geneticslab
Mike’s Genetics & Genomics Workbook
Announce
Model organisms
Tomato
Yeast
Arabidopsis
Brassica
Drosophila
Growth media
Growth media – Yeast
Bioinformatics
Bioinformatics I: BLAST
Download sequences with BATCH Entrez
Bioinformatics II: Detecting designed sequences
Use of ORF Finder: Practice and Worked example
Use of Virtual Ribosome: Practice and worked example
Bioinformatics project: Evolutionary analysis of GWAS candidate genes
GWAS and essential genes
Identify phenotype and genotype of interest from PheGenI
Protocol: GWAS and the PheGenI Database
Evaluate possible citation bias
How to convert a distance matrix to a pairwise table with R
Routine sequence analysis with R
Phylogenetics
Sequence alignment: Basics explained
Make a phylogenetic tree
Make a gene tree
Use of web services for building a gene tree
Change root for gene tree
Working with Newick file format
Tree reconciliation
Evolutionary rate tests
Molecular clock
Systems Biology
Install Cytoscape
Create network from csv file
Network of co-authors
NDEx Webapp example
List of of operations example
ImmPort gene list example
Gene Ontology database example
App and software help
Help with imageJ
Digital literacy
Hidden files and directories
How to resize and convert image files
Please create good file names
Text files are data files
How to merge text files
Lab notebooks
Digital lab notebooks
Working folders
Systems Biology
Systems Biology
Future home, Notes on Systems Biology
Software
List of free bioinformatics software
Install R
Install Cytoscape
Install app plugins
Create network from csv file
Social Network example